{"id":281,"external_id":"?","external_id_system":"?","title":"Plankton community in Multinet (300µm), Tara Oceans cruise","short_title":"tara-oceans-multinet-zooscan","citation":"Tara Oceans Consortium, Tara GOSEE, Laboratoire d'Océanographie de Villefranche (LOV), Sorbonne Université/CNRS; 2020; Plankton community in Multinet (300µm), Tara Oceans cruise","license":"CC BY 4.0","abstract":"Tara expeditions (2009-2013) sampled the world's oceans with standardized protocols, putting an exceptional effort into sampling plankton diversity across a large size range, using a combination of water samples and net tows.\nThe efforts to explore the genomic diversity of plankton, through metabarcoding and metagenomics, have led to well publicized papers and have made the renown of Tara. While a similar extensive effort has been put on imaging, the datasets are not public yet. \n\nIn a limited number of stations, in addition to the usual 5µm -> ~5cm Tara sampling strategy, multinet trawls allowed to sample the vertical distribution of plankton; this is the content of this dataset. Using a 300µm mesh net, it cover organisms from 300µm to ~3cm.","description":"Multinet net (300µm mesh) hauled vertically, from 1000m depth or the bottom to the surface. Five nets were successively closed to sample plankton from different depths layers, hence separating the mesopelagic from the epipelagic populations.\nSample preserved in 4% buffered formalin and stored over the long term at the Centre de Collections Planctoniques de Villefranche (CCPv).\nSample scanned on a ZooScan, images processed with ZooProcess and sorted taxonomically on EcoTaxa, within the Plateforme d'Imagerie Quantitative de Villefranche (PIQv).\nThe PIQv and CCPv platforms are part of EMBRC-France, a national Research Infrastructure supported by ANR, under the reference ANR-10-INSB-02.","project_ids":[714],"provider_user":{"id":4,"email":"jean-olivier.irisson@imev-mer.fr","name":"Jean-Olivier Irisson","organisation":"Oceanographic Laboratory of Villefranche sur Mer - LOV"},"contact_user":{"id":16,"email":"fabien.lombard@imev-mer.fr","name":"Fabien Lombard","organisation":"Oceanographic Laboratory of Villefranche sur Mer - LOV"},"creator_users":[{"id":2,"email":"marc.picheral@obs-vlfr.fr","name":"Marc Picheral","organisation":"Oceanographic Laboratory of Villefranche sur Mer - LOV"},{"id":4,"email":"jean-olivier.irisson@imev-mer.fr","name":"Jean-Olivier Irisson","organisation":"Oceanographic Laboratory of Villefranche sur Mer - LOV"},{"id":5,"email":"amanda.elineau@obs-vlfr.fr","name":"Amanda Elineau","organisation":"Sea Institute of Villefranche sur Mer - IMEV"},{"id":8,"email":"jean.baptiste.romagnan@ifremer.fr","name":"Jean-Baptiste Romagnan","organisation":"Ifremer Nantes - IFREMER"},{"id":16,"email":"fabien.lombard@imev-mer.fr","name":"Fabien Lombard","organisation":"Oceanographic Laboratory of Villefranche sur Mer - LOV"},{"id":18,"email":"lars.stemmann@imev-mer.fr","name":"Lars Stemmann","organisation":"Oceanographic Laboratory of Villefranche sur Mer - LOV"},{"id":19,"email":"gorsky@obs-vlfr.fr","name":"Gaby Gorsky","organisation":"Oceanographic Laboratory of Villefranche sur Mer - LOV"},{"id":75,"email":"jalabert.laetitia8@gmail.com","name":"Laetitia Jalabert","organisation":"Sea Institute of Villefranche sur Mer - IMEV"},{"id":92,"email":"natalia.llopismon@univ-brest.fr","name":"Natalia Llopis Monferrer","organisation":"Brest University - UBO"},{"id":325,"email":"camille.merland@imev-mer.fr","name":"Camille Merland","organisation":"Sea Institute of Villefranche sur Mer - IMEV"},{"id":483,"email":"emilia@iopan.pl","name":"Emilia Trudnowska","organisation":"Institute of Oceanology Polish Academy of Sciences - IO PAN"},{"id":900,"email":"pesant@ebi.ac.uk","name":"Stéphane PESANT","organisation":"European Bioinformatics Institute - EMBL"},{"id":969,"email":"celine.dimier@imev-mer.fr","name":"Céline Dimier","organisation":"Sea Institute of Villefranche sur Mer - IMEV"},{"id":997,"email":"searson65@yahoo.com","name":"Sarah Searson","organisation":"Oceanographic Laboratory of Villefranche sur Mer - LOV"},{"id":998,"email":"kandels@embl.de","name":"Stefanie Kandels-Lewis","organisation":"European Molecular Biology Laboratory - EMBL"}],"creator_organisations":[{"id":890,"name":"Institut de la Mer de Villefranche (IMEV)","directories":null},{"id":902,"name":"Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche (LOV)","directories":null},{"id":901,"name":"Sorbonne Université/CNRS, Institut de la Mer de Villefranche (IMEV), Laboratoire d'Océanographie de Villefranche (LOV)","directories":null},{"id":892,"name":"Institute of Oceanology Polish Academy of Sciences, Department of Marine Ecology","directories":null},{"id":904,"name":"Sorbonne Université/CNRS, Station Biologique de Roscoff","directories":null},{"id":886,"name":"European Molecular Biology Laboratory (EMBL), Heidelberg","directories":null},{"id":906,"name":"Tara Oceans Consortium","directories":null},{"id":897,"name":"MARUM, Center for Marine Environmental Sciences, University of Bremen","directories":null}],"associate_users":[],"associate_organisations":[],"display_order":{"creators":["2_u","892_o","886_o","16_u","19_u","8_u","75_u","4_u","906_o","900_u","997_u","904_o","483_u","5_u","897_o","92_u","18_u","969_u","890_o","998_u","902_o","325_u","901_o"],"associates":[]}}