EcoTaxa

Project: h20 TARA - Subset created on 2019-06-02 for test (managed by : Fabien Lombard,Sebastien Colin,Flora Vincent,Juan Pierella,Hugo Berthelot,Tina Wiegand)
To report a mistake, contact Fabien Lombard

Classification :
t005
t005 < temporary (id=85016)

Complementary information ( edit ):

Image list : 1

longitude	79.42010	latitude	78.95640	Date	2013-07-08	Time (daytime)	04:12:00 (?)
Depth min	3.0	Depth max	7.0	Classif auto	t005 (0.053)	Classif auto when	2024-06-22 00:57:11.733371
Object #	123654789	Original Object ID	S173--S1--R24--G100018869--A140902--L03450
feature_field_pos0	4.00	feature_field_pos1	11.00	feature_pos_in_field0	1694	feature_pos_in_field1	531
feature_size2d	179	feature_size	227	feature_perimeter	78.90	feature_roundness	2.76
feature_major_axis	22.02	feature_auto.central_zernike0	0.32	feature_auto.central_zernike1	0.21	feature_auto.central_zernike2	0.04
feature_auto.central_zernike3	0.28	feature_auto.central_zernike4	0.17	feature_auto.central_zernike5	0.19	feature_auto.central_zernike6	0.03
feature_auto.central_zernike7	0.03	feature_auto.central_zernike8	0.12	feature_auto.central_zernike9	0.07	feature_minor_axis	3.92
feature_auto.central_zernike10	0.12	feature_auto.central_zernike11	0.09	feature_auto.central_zernike12	0.03	feature_auto.central_zernike13	0.11
feature_auto.central_zernike14	0.04	feature_auto.central_zernike15	0.04	feature_auto.central_zernike16	0.04	feature_auto.central_zernike17	0.08
feature_auto.central_zernike18	0.06	feature_auto.central_zernike19	0.02	feature_dna.size	0.00	feature_auto.central_zernike20	0.04
feature_auto.central_zernike21	0.07	feature_auto.central_zernike22	0.12	feature_auto.central_zernike23	0.03	feature_auto.central_zernike24	0.05
feature_lysine.central_zernike0	0.32	feature_lysine.central_zernike1	0.12	feature_lysine.central_zernike2	0.24	feature_lysine.central_zernike3	0.24
feature_lysine.central_zernike4	0.17	feature_auto.size	35.69	feature_lysine.central_zernike5	0.20	feature_lysine.central_zernike6	0.16
feature_lysine.central_zernike7	0.14	feature_lysine.central_zernike8	0.12	feature_lysine.central_zernike9	0.18	feature_lysine.central_zernike10	0.19
feature_lysine.central_zernike11	0.18	feature_lysine.central_zernike12	0.07	feature_lysine.central_zernike13	0.04	feature_lysine.central_zernike14	0.04
feature_lysine.size	185	feature_lysine.central_zernike15	0.02	feature_lysine.central_zernike16	0.14	feature_lysine.central_zernike17	0.13
feature_lysine.central_zernike18	0.15	feature_lysine.central_zernike19	0.12	feature_lysine.central_zernike20	0.00	feature_lysine.central_zernike21	0.00
feature_lysine.central_zernike22	0.02	feature_lysine.central_zernike23	0.03	feature_lysine.central_zernike24	0.02	feature_dio6.size	101
feature_dio6.central_zernike0	0.32	feature_dio6.central_zernike1	0.15	feature_dio6.central_zernike2	0.15	feature_dio6.central_zernike3	0.23
feature_dio6.central_zernike4	0.21	feature_dio6.central_zernike5	0.20	feature_dio6.central_zernike6	0.05	feature_dio6.central_zernike7	0.04
feature_dio6.central_zernike8	0.13	feature_dio6.central_zernike9	0.17	feature_dna.nr_objects	0.00	feature_dio6.central_zernike10	0.16
feature_dio6.central_zernike11	0.23	feature_dio6.central_zernike12	0.01	feature_dio6.central_zernike13	0.06	feature_dio6.central_zernike14	0.07
feature_dio6.central_zernike15	0.06	feature_dio6.central_zernike16	0.12	feature_dio6.central_zernike17	0.09	feature_dio6.central_zernike18	0.16
feature_dio6.central_zernike19	0.16	feature_dna.sum	0.00	feature_dio6.central_zernike20	0.01	feature_dio6.central_zernike21	0.10
feature_dio6.central_zernike22	0.07	feature_dio6.central_zernike23	0.10	feature_dio6.central_zernike24	0.11	feature_lightbest.central_zernike0	0.32
feature_lightbest.central_zernike1	0.10	feature_lightbest.central_zernike2	0.21	feature_lightbest.central_zernike3	0.22	feature_lightbest.central_zernike4	0.11
feature_dna.max	0.00	feature_lightbest.central_zernike5	0.14	feature_lightbest.central_zernike6	0.12	feature_lightbest.central_zernike7	0.10
feature_lightbest.central_zernike8	0.08	feature_lightbest.central_zernike9	0.07	feature_lightbest.central_zernike10	0.08	feature_lightbest.central_zernike11	0.06
feature_lightbest.central_zernike12	0.03	feature_lightbest.central_zernike13	0.03	feature_lightbest.central_zernike14	0.02	feature_dna.min	0.00
feature_lightbest.central_zernike15	0.05	feature_lightbest.central_zernike16	0.02	feature_lightbest.central_zernike17	0.01	feature_lightbest.central_zernike18	0.02
feature_lightbest.central_zernike19	0.03	feature_lightbest.central_zernike20	0.00	feature_lightbest.central_zernike21	0.00	feature_lightbest.central_zernike22	0.01
feature_lightbest.central_zernike23	0.01	feature_lightbest.central_zernike24	0.03	feature_dna.mean	0.00	feature_dna.haralick0	0.05
feature_dna.haralick1	16.26	feature_dna.haralick2	-0.05	feature_dna.haralick3	7.82	feature_dna.haralick4	0.34
feature_dna.haralick5	6.86	feature_dna.haralick6	15.04	feature_dna.haralick7	3.24	feature_dna.haralick8	4.52
feature_dna.haralick9	0.01	feature_dna.std	0.00	feature_dna.haralick10	2.77	feature_dna.haralick11	-0.36
feature_dna.haralick12	0.92	feature_auto.haralick0	0.01	feature_auto.haralick1	85.35	feature_auto.haralick2	0.57
feature_auto.haralick3	99.16	feature_auto.haralick4	0.19	feature_auto.haralick5	19.79	feature_auto.haralick6	311
feature_dna.median	0.00	feature_auto.haralick7	5.56	feature_auto.haralick8	8.56	feature_auto.haralick9	0.00
feature_auto.haralick10	4.19	feature_auto.haralick11	-0.14	feature_auto.haralick12	0.86	feature_lysine.haralick0	0.00
feature_lysine.haralick1	765	feature_lysine.haralick2	0.88	feature_lysine.haralick3	3151	feature_dna.sum2	0.00
feature_lysine.haralick4	0.09	feature_lysine.haralick5	138	feature_lysine.haralick6	11840	feature_lysine.haralick7	8.30
feature_lysine.haralick8	12.14	feature_lysine.haralick9	0.00	feature_lysine.haralick10	5.67	feature_lysine.haralick11	-0.35
feature_lysine.haralick12	1.00	feature_dio6.haralick0	0.01	feature_dna.mean2	0.00	feature_dio6.haralick1	55.84
feature_dio6.haralick2	0.82	feature_dio6.haralick3	151	feature_dio6.haralick4	0.29	feature_dio6.haralick5	22.54
feature_dio6.haralick6	550	feature_dio6.haralick7	5.75	feature_dio6.haralick8	8.53	feature_dio6.haralick9	0.00
feature_dio6.haralick10	3.76	feature_dna.surfvoxels	0.00	feature_dio6.haralick11	-0.23	feature_dio6.haralick12	0.94
feature_lightmax.haralick0	0.00	feature_lightmax.haralick1	92.79	feature_lightmax.haralick2	0.75	feature_lightmax.haralick3	188
feature_lightmax.haralick4	0.23	feature_lightmax.haralick5	287	feature_lightmax.haralick6	660	feature_lightmax.haralick7	6.48
feature_dna.surfdist.mean	0.00	feature_lightmax.haralick8	9.96	feature_lightmax.haralick9	0.00	feature_lightmax.haralick10	4.08
feature_lightmax.haralick11	-0.21	feature_lightmax.haralick12	0.95	feature_lightbest.haralick0	0.01	feature_lightbest.haralick1	6.18
feature_lightbest.haralick2	0.94	feature_lightbest.haralick3	52.91	feature_lightbest.haralick4	0.38	feature_dna.surfdist.median	0.00
feature_lightbest.haralick5	249	feature_lightbest.haralick6	205	feature_lightbest.haralick7	5.32	feature_lightbest.haralick8	7.64
feature_lightbest.haralick9	0.00	feature_lightbest.haralick10	2.52	feature_lightbest.haralick11	-0.29	feature_lightbest.haralick12	0.96
feature_dna.lbp_8_8_0	19548	feature_dna.lbp_8_8_1	1213	feature_auto.nr_objects	3.00	feature_dna.lbp_8_8_2	52.00
feature_dna.lbp_8_8_3	32.00	feature_dna.lbp_8_8_4	2.00	feature_dna.lbp_8_8_5	24.00	feature_dna.lbp_8_8_6	2.00
feature_dna.lbp_8_8_7	0.00	feature_dna.lbp_8_8_8	1.00	feature_dna.lbp_8_8_9	28.00	feature_dna.lbp_8_8_10	0.00
feature_dna.lbp_8_8_11	2.00	feature_auto.sum	24314	feature_dna.lbp_8_8_12	0.00	feature_dna.lbp_8_8_13	1.00
feature_dna.lbp_8_8_14	1.00	feature_dna.lbp_8_8_15	0.00	feature_dna.lbp_8_8_16	0.00	feature_dna.lbp_8_8_17	1.00
feature_dna.lbp_8_8_18	0.00	feature_dna.lbp_8_8_19	0.00	feature_dna.lbp_8_8_20	0.00	feature_dna.lbp_8_8_21	0.00
feature_auto.max	105	feature_dna.lbp_8_8_22	0.00	feature_dna.lbp_8_8_23	0.00	feature_dna.lbp_8_8_24	0.00
feature_dna.lbp_8_8_25	0.00	feature_dna.lbp_8_8_26	0.00	feature_dna.lbp_8_8_27	0.00	feature_dna.lbp_8_8_28	0.00
feature_dna.lbp_8_8_29	0.00	feature_dna.lbp_8_8_30	0.00	feature_dna.lbp_8_8_31	0.00	feature_auto.min	0.00
feature_dna.lbp_8_8_32	0.00	feature_dna.lbp_8_8_33	0.00	feature_dna.lbp_8_8_34	0.00	feature_dna.lbp_8_8_35	0.00
feature_auto.lbp_8_8_0	14947	feature_auto.lbp_8_8_1	1977	feature_auto.lbp_8_8_2	1206	feature_auto.lbp_8_8_3	298
feature_auto.lbp_8_8_4	754	feature_auto.lbp_8_8_5	214	feature_auto.mean	24.39	feature_auto.lbp_8_8_6	127
feature_auto.lbp_8_8_7	187	feature_auto.lbp_8_8_8	439	feature_auto.lbp_8_8_9	39.00	feature_auto.lbp_8_8_10	58.00
feature_auto.lbp_8_8_11	21.00	feature_auto.lbp_8_8_12	43.00	feature_auto.lbp_8_8_13	48.00	feature_auto.lbp_8_8_14	43.00
feature_auto.lbp_8_8_15	58.00	feature_auto.std	17.48	feature_auto.lbp_8_8_16	157	feature_auto.lbp_8_8_17	16.00
feature_auto.lbp_8_8_18	27.00	feature_auto.lbp_8_8_19	9.00	feature_auto.lbp_8_8_20	10.00	feature_auto.lbp_8_8_21	24.00
feature_auto.lbp_8_8_22	15.00	feature_auto.lbp_8_8_23	6.00	feature_auto.lbp_8_8_24	16.00	feature_auto.lbp_8_8_25	12.00
feature_auto.median	22.00	feature_auto.lbp_8_8_26	28.00	feature_auto.lbp_8_8_27	40.00	feature_auto.lbp_8_8_28	0.00
feature_auto.lbp_8_8_29	10.00	feature_auto.lbp_8_8_30	3.00	feature_auto.lbp_8_8_31	21.00	feature_auto.lbp_8_8_32	9.00
feature_auto.lbp_8_8_33	3.00	feature_auto.lbp_8_8_34	33.00	feature_auto.lbp_8_8_35	9.00	feature_auto.sum2	897508
feature_lysine.lbp_8_8_0	12791	feature_lysine.lbp_8_8_1	1197	feature_lysine.lbp_8_8_2	1678	feature_lysine.lbp_8_8_3	64.00
feature_lysine.lbp_8_8_4	1275	feature_lysine.lbp_8_8_5	298	feature_lysine.lbp_8_8_6	58.00	feature_lysine.lbp_8_8_7	100
feature_lysine.lbp_8_8_8	2414	feature_lysine.lbp_8_8_9	35.00	feature_auto.mean2	900	feature_lysine.lbp_8_8_10	73.00
feature_lysine.lbp_8_8_11	14.00	feature_lysine.lbp_8_8_12	16.00	feature_lysine.lbp_8_8_13	32.00	feature_lysine.lbp_8_8_14	22.00
feature_lysine.lbp_8_8_15	53.00	feature_lysine.lbp_8_8_16	349	feature_lysine.lbp_8_8_17	7.00	feature_lysine.lbp_8_8_18	13.00
feature_lysine.lbp_8_8_19	2.00	feature_auto.surfvoxels	1293	feature_lysine.lbp_8_8_20	5.00	feature_lysine.lbp_8_8_21	19.00
feature_lysine.lbp_8_8_22	26.00	feature_lysine.lbp_8_8_23	4.00	feature_lysine.lbp_8_8_24	15.00	feature_lysine.lbp_8_8_25	16.00
feature_lysine.lbp_8_8_26	30.00	feature_lysine.lbp_8_8_27	97.00	feature_lysine.lbp_8_8_28	0.00	feature_lysine.lbp_8_8_29	2.00
feature_auto.surfdist.mean	5.62	feature_lysine.lbp_8_8_30	3.00	feature_lysine.lbp_8_8_31	14.00	feature_lysine.lbp_8_8_32	21.00
feature_lysine.lbp_8_8_33	3.00	feature_lysine.lbp_8_8_34	86.00	feature_lysine.lbp_8_8_35	75.00	feature_dio6.lbp_8_8_0	12964
feature_dio6.lbp_8_8_1	1440	feature_dio6.lbp_8_8_2	1663	feature_dio6.lbp_8_8_3	99.00	feature_auto.surfdist.median	5.80
feature_dio6.lbp_8_8_4	1520	feature_dio6.lbp_8_8_5	310	feature_dio6.lbp_8_8_6	96.00	feature_dio6.lbp_8_8_7	158
feature_dio6.lbp_8_8_8	1804	feature_dio6.lbp_8_8_9	31.00	feature_dio6.lbp_8_8_10	46.00	feature_dio6.lbp_8_8_11	3.00
feature_dio6.lbp_8_8_12	19.00	feature_dio6.lbp_8_8_13	13.00	feature_lysine.nr_objects	1.00	feature_dio6.lbp_8_8_14	34.00
feature_dio6.lbp_8_8_15	33.00	feature_dio6.lbp_8_8_16	383	feature_dio6.lbp_8_8_17	5.00	feature_dio6.lbp_8_8_18	11.00
feature_dio6.lbp_8_8_19	6.00	feature_dio6.lbp_8_8_20	1.00	feature_dio6.lbp_8_8_21	22.00	feature_dio6.lbp_8_8_22	8.00
feature_dio6.lbp_8_8_23	5.00	feature_lysine.sum	711988	feature_dio6.lbp_8_8_24	7.00	feature_dio6.lbp_8_8_25	16.00
feature_dio6.lbp_8_8_26	17.00	feature_dio6.lbp_8_8_27	76.00	feature_dio6.lbp_8_8_28	0.00	feature_dio6.lbp_8_8_29	1.00
feature_dio6.lbp_8_8_30	5.00	feature_dio6.lbp_8_8_31	17.00	feature_dio6.lbp_8_8_32	15.00	feature_dio6.lbp_8_8_33	2.00
feature_lysine.max	255	feature_dio6.lbp_8_8_34	55.00	feature_dio6.lbp_8_8_35	22.00	feature_lightbest.lbp_8_8_0	12973
feature_lightbest.lbp_8_8_1	1435	feature_lightbest.lbp_8_8_2	2030	feature_lightbest.lbp_8_8_3	153	feature_lightbest.lbp_8_8_4	1366
feature_lightbest.lbp_8_8_5	106	feature_lightbest.lbp_8_8_6	97.00	feature_lightbest.lbp_8_8_7	94.00	feature_lysine.min	27.00
feature_lightbest.lbp_8_8_8	1173	feature_lightbest.lbp_8_8_9	64.00	feature_lightbest.lbp_8_8_10	65.00	feature_lightbest.lbp_8_8_11	26.00
feature_lightbest.lbp_8_8_12	64.00	feature_lightbest.lbp_8_8_13	69.00	feature_lightbest.lbp_8_8_14	42.00	feature_lightbest.lbp_8_8_15	62.00
feature_lightbest.lbp_8_8_16	312	feature_lightbest.lbp_8_8_17	27.00	feature_lysine.mean	138	feature_lightbest.lbp_8_8_18	45.00
feature_lightbest.lbp_8_8_19	15.00	feature_lightbest.lbp_8_8_20	15.00	feature_lightbest.lbp_8_8_21	55.00	feature_lightbest.lbp_8_8_22	14.00
feature_lightbest.lbp_8_8_23	19.00	feature_lightbest.lbp_8_8_24	31.00	feature_lightbest.lbp_8_8_25	30.00	feature_lightbest.lbp_8_8_26	48.00
feature_lightbest.lbp_8_8_27	180	feature_lysine.std	58.63	feature_lightbest.lbp_8_8_28	1.00	feature_lightbest.lbp_8_8_29	6.00
feature_lightbest.lbp_8_8_30	18.00	feature_lightbest.lbp_8_8_31	36.00	feature_lightbest.lbp_8_8_32	25.00	feature_lightbest.lbp_8_8_33	13.00
feature_lightbest.lbp_8_8_34	128	feature_lightbest.lbp_8_8_35	70.00	feature_dna.auto.corr	0.14	feature_dna.auto.thresh.overlap	-1.00
feature_lysine.median	128	feature_dna.lysine.corr	0.18	feature_dna.lysine.thresh.overlap	-1.00	feature_dna.dio6.corr	0.19
feature_dna.dio6.thresh.overlap	-1.00	feature_auto.lysine.corr	0.46	feature_auto.lysine.thresh.overlap	0.00	feature_auto.dio6.corr	0.61
feature_auto.dio6.thresh.overlap	0.00	feature_lysine.dio6.corr	0.71	feature_lysine.dio6.thresh.overlap	0.00	feature_lysine.sum2	115867254
feature_dna.moment11	0.01	feature_dna.moment12	0.01	feature_dna.moment22	0.01	feature_auto.moment11	0.13
feature_auto.moment12	0.12	feature_auto.moment22	0.09	feature_lysine.moment11	1.65	feature_lysine.moment12	1.41
feature_lysine.moment22	1.08	feature_dio6.moment11	0.27	feature_lysine.mean2	22424	feature_dio6.moment12	0.23
feature_dio6.moment22	0.18	feature_lightbest.moment11	30.10	feature_lightbest.moment12	25.93	feature_lightbest.moment22	20.23
feature_lysine.surfvoxels	6339	feature_lysine.surfdist.mean	10.08	feature_lysine.surfdist.median	10.17	feature_dio6.nr_objects	5.00
feature_dio6.sum	90859	feature_dio6.max	183	feature_dio6.min	2.00	feature_dio6.mean	32.15
feature_dio6.std	20.38	feature_dio6.median	27.00	feature_dio6.sum2	4094573	feature_dio6.mean2	1449
feature_dio6.surfvoxels	3627	feature_dio6.surfdist.mean	7.99	feature_dio6.surfdist.median	7.55	feature_center_mass0.dna	0.12
feature_center_mass1.dna	0.61	feature_center_mass2.dna	0.48	feature_center_mass0.auto	0.05	feature_center_mass1.auto	0.70
feature_center_mass2.auto	0.45	feature_center_mass0.lysine	0.04	feature_center_mass1.lysine	0.58	feature_center_mass2.lysine	0.50
feature_center_mass0.dio6	0.06	feature_center_mass1.dio6	0.64	feature_center_mass2.dio6	0.46	feature_dna.central_zernike0	0.32
feature_dna.central_zernike1	0.15	feature_dna.central_zernike2	0.29	feature_dna.central_zernike3	0.12	feature_dna.central_zernike4	0.20
feature_dna.central_zernike5	0.12	feature_dna.central_zernike6	0.07	feature_dna.central_zernike7	0.12	feature_dna.central_zernike8	0.10
feature_dna.central_zernike9	0.08	feature_dna.central_zernike10	0.21	feature_dna.central_zernike11	0.02	feature_dna.central_zernike12	0.02
feature_dna.central_zernike13	0.10	feature_dna.central_zernike14	0.17	feature_dna.central_zernike15	0.08	feature_dna.central_zernike16	0.08
feature_dna.central_zernike17	0.06	feature_dna.central_zernike18	0.09	feature_dna.central_zernike19	0.05	feature_dna.central_zernike20	0.04
feature_dna.central_zernike21	0.05	feature_dna.central_zernike22	0.11	feature_dna.central_zernike23	0.15	feature_dna.central_zernike24	0.01
htm_sample_barcode	G100018869	depth_code	S1	tara_barcode

Sample details :

Original ID	G100018869			longitude	79.42	latitude	78.96
station	173	tarabarcode	G100018869	concentration_factor		volumeload
wellcoordinates		channel1	Membranes-DiOC6 green	channel2	Chlorophyll red	channel3	Transmitted Light gray
channel4	DNA-Hoechst blue	channel5	surface staining-ALEXA546 purple	zslices	34	channels	5
framesperfov	170	framepix	X3072Y3114	fovwidth	0.775	mosaicfov	180
mosaicdim	X15Y12	mosaicoverlap	5	mosaicarea	98.34333438	volumeimaged	113.9287933
runnningtime	09:00:00
Dataportal Desc.

Acquisition details :

Original ID	G100018869			Instrument
label_aggregated	S173--S1--R24--G100018869--A140902	date	2014-09-02T14:30:00	operator	Luca Santangeli	run_label	TARA_HCS1_H02_G100018869_G100018985--2014_09_02_12_27_30
run_duration	18:58:00	run_magnification	20	run_system	Leica_SP8	run_voxelsize	X252Y252Z3000
plate_welldesign	U02V03	plate_wellheight	10.4	plate_wellwidth	8.3	plate_wellarea	86.32
sample_volumeload	0.4	sample_wellcoordinates	U00V01

Processing details :

Original ID.	G100018869
calibrationbeads1_intensity	0.32	calibrationbeads1_color	red	calibrationbeads1_diameter	2700	calibrationbeads2_intensity	0.47
calibrationbeads2_color	green	calibrationbeads2_diameter	5700	calibrationbeads3_intensity	1.41	calibrationbeads3_color	red
calibrationbeads3_diameter	2700	calibrationbeads4_intensity	1.37	calibrationbeads4_color	green	calibrationbeads4_diameter	5700
calibrationbeads5_intensity	4.1	calibrationbeads5_color	red	calibrationbeads5_diameter	2700	calibrationbeads6_intensity	2.6
calibrationbeads6_color	green	calibrationbeads6_diameter	5700	calibrationbeads7_intensity	100	calibrationbeads7_color	4 colors (blue,green,orange, dark red)
calibrationbeads7_diameter	4000	calibrationbeads8_intensity	100	calibrationbeads8_color	3 colors (green orange dark red ring)	calibrationbeads8_diameter	14800

History :

Date	Type	Taxo	Author	Quality
2024-06-22 00:57:11	Automatic	t005	-	P

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